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Utrecht University Repository: Recent submissions

  • A systematic literature review on the impact of formatting elements on code legibility 
    Oliveira, Delano; Santos, Reydne; Madeiral, Fernanda; Masuhara, Hidehiko; Castor, Fernando (Elsevier, 2023-09)
    Context: Software programs can be written in different but functionally equivalent ways. Even though previous research has compared specific formatting elements to find out which alternatives affect code legibility, seeing ...
  • Evolutionary origin of genomic structural variations in domestic yaks 
    Liu, Xinfeng; Liu, Wenyu; Lenstra, Johannes A; Zheng, Zeyu; Wu, Xiaoyun; Yang, Jiao; Li, Bowen; Yang, Yongzhi; Qiu, Qiang; Liu, Hongyu; Li, Kexin; Liang, Chunnian; Guo, Xian; Ma, Xiaoming; Abbott, Richard J; Kang, Minghui; Yan, Ping; Liu, Jianquan (Nature Publishing Group, 2023-12)
    Yak has been subject to natural selection, human domestication and interspecific introgression during its evolution. However, genetic variants favored by each of these processes have not been distinguished previously. We ...
  • Analyzing the Resource Usage Overhead of Mobile App Development Frameworks 
    Oliveira, Wellington; Moraes, Bernardo; Castor, Fernando; Fernandes, Joao Paulo (Association for Computing Machinery (ACM), 2023-06-14)
    Mobile app development frameworks lower the effort to write and deploy apps across different execution platforms. At the same time, their use may limit native optimizations and impose overhead, increasing resource usage. ...
  • Ebserver: Automating Resource-Usage Data Collection of Android Applications 
    Oliveira, Wellington; Moraes, Bernardo; Castor, Fernando; Fernandes, Joao Paulo (Institute of Electrical and Electronics Engineers Inc., 2023-07-11)
    Mobile applications are a typical component of people's routines. Because of that, there is fierce competition for mobile users' attention, creating pressure for mobile developers to optimize their applications in a number ...
  • DatAR: Comparing Relationships between Brain Regions and Diseases: An Immersive AR Tool for Neuroscientists 
    Tanhaei, Ghazaleh; Hardman, Lynda; Hürst, Wolfgang (Association for Computing Machinery (ACM), 2023-08-29)
    Different brain diseases are associated with distinct patterns of affected brain regions. Neuroscientists aim to understand the variability of these patterns across different brain diseases. We used a user-centered design ...
  • FaceXHuBERT: Text-less Speech-driven E(X)pressive 3D Facial Animation Synthesis Using Self-Supervised Speech Representation Learning 
    Haque, Kazi Injamamul; Yumak, Zerrin (arXiv, 2023-03-09)
    This paper presents FaceXHuBERT, a text-less speech-driven 3D facial animation generation method that allows to capture personalized and subtle cues in speech (e.g. identity, emotion and hesitation). It is also very robust ...
  • Context-Based Activity Label-Splitting 
    Zelst, Sebastiaan J. van; Tai, Jonas; Langenberg, Moritz; Lu, Xixi (Springer, 2023-09-01)
    The information systems used in companies store event data describing the historical execution of the processes they support. Process mining covers the automated analysis of such data, generating insights that may ultimately ...
  • Characterization of acrosin and acrosin binding protein as novel CRISP2 interacting proteins in boar spermatozoa 
    Zhang, Min; Chiozzi, Riccardo Zenezini; Bromfield, Elizabeth G; Heck, Albert Jr; Helms, J Bernd; Gadella, Bart M (John Wiley and Sons Inc., 2023-10)
    Background: Previously, we reported that cysteine-rich secretory protein 2 is involved in high molecular weight complexes in boar spermatozoa. These cysteine-rich secretory protein 2protein complexes are formed at the last ...
  • Coinductive control of inductive data types 
    North, Paige Randall; Péroux, Maximilien (arXiv, 2023-03-29)
    We combine the theory of inductive data types with the theory of universal measurings. By doing so, we find that many categories of algebras of endofunctors are actually enriched in the corresponding category of coalgebras ...
  • FaceDiffuser: Speech-Driven 3D Facial Animation Synthesis Using Diffusion 
    Stan, Stefan; Haque, Kazi Injamamul; Yumak, Zerrin (2023-09-20)
    Speech-driven 3D facial animation synthesis has been a challenging task both in industry and research. Recent methods mostly focus on deterministic deep learning methods meaning that given a speech input, the output is ...
  • Combating Toxicity, Harassment, and Abuse in Online Social Spaces: A Workshop at CHI 2023 
    Mandryk, Regan L.; Frommel, Julian; Goyal, Nitesh; Freeman, Guo; Lampe, Cliff; Vieweg, Sarah; Wohn, Donghee Yvette (Association for Computing Machinery (ACM), 2023-04-19)
    Online social spaces provide much needed connection and belonging - particularly in a context of continued lack of global mobility due to the ongoing Covid-19 pandemic and climate crisis. However, the norms of online social ...
  • Competitive Algorithms for Generalized k-Server in Uniform Metrics 
    Bansal, Nikhil; Eliás, Marek; Koumoutsos, Grigorios; Nederlof, Jesper (Association for Computing Machinery (ACM), 2023-02-20)
    The generalized k-server problem is a far-reaching extension of the k-server problem with several applications. Here, each server si lies in its own metric space Mi. A request is a k-tuple r = (r1,r2,… ,rk, which is served ...
  • Analyzing the Quality of Submissions in Online Programming Courses 
    Tigina, Maria; Birillo, Anastasiia; Golubev, Yaroslav; Keuning, Hieke; Vyahhi, Nikolay; Bryksin, Timofey (IEEE, 2023-05-20)
    Programming education should aim to provide students with a broad range of skills that they will later use while developing software. An important aspect in this is their ability to write code that is not only correct but ...
  • STEM-netwerk: Leren van een lerend netwerk 
    Van der Zee, Symen; Bredeweg, Bert; Embrechts, Anika; Hotze, Anna; Jonker, Vincent; Keijzer, Ronald; Kruiskamp, Marit; Nieveen, Nienke; Müller, Anneloes; Pennink, Dorrith; Pijls, Monique; Poortman, Cindy (2023-06)
    In 2020 is vanuit het SPRONG-Educatief programma van SIA en NRO het STEMnetwerk (Science, Technology, Engineering, Mathematics) gestart. Doel hiervan is het bouwen van een stevig landelijk lerend netwerk op het gebied van ...
  • A Systematic Mapping Study of Code Quality in Education -- with Complete Bibliography 
    Keuning, Hieke; Jeuring, Johan; Heeren, Bastiaan (arXiv, 2023-04-26)
    While functionality and correctness of code has traditionally been the main focus of computing educators, quality aspects of code are getting increasingly more attention. High-quality code contributes to the maintainability ...
  • Interactive Multi-interest Process Pattern Discovery 
    Vazifehdoostirani, Mozhgan; Genga, Laura; Lu, Xixi; Verhoeven, Rob; Laarhoven, Hanneke van; Dijkman, Remco M. (Springer, 2023-09)
    Process pattern discovery methods (PPDMs) aim at identifying patterns of interest to users. Existing PPDMs typically are unsupervised and focus on a single dimension of interest, such as discovering frequent patterns. We ...
  • Detecting Code Quality Issues in Pre-written Templates of Programming Tasks in Online Courses 
    Birillo, Anastasiia; Artser, Elizaveta; Golubev, Yaroslav; Tigina, Maria; Keuning, Hieke; Vyahhi, Nikolay; Bryksin, Timofey (Association for Computing Machinery (ACM), 2023-06-29)
    In this work, we developed an algorithm for detecting code quality issues in the templates of online programming tasks, validated it, and conducted an empirical study on the dataset of student solutions. The algorithm ...
  • Facial Image-Based Automatic Assessment of Equine Pain 
    Pessanha, Francisca; Salah, Albert Ali; Loon, Thijs van; Veltkamp, Remco (Institute of Electrical and Electronics Engineers Inc., 2023-07-01)
    Recognition of pain in animals is essential for their welfare. However, since there is no verbal communication, this assessment depends solely on the ability of the observer to locate visible or audible signs of pain. The ...
  • Polymorphic variants involved in methylation regulation: a strategy to discover risk loci for pancreatic ductal adenocarcinoma 
    Corradi, Chiara; Lencioni, Giulia; Gentiluomo, Manuel; Felici, Alessio; Latiano, Anna; Kiudelis, Gediminas; van Eijck, Casper H J; Marta, Katalin; Lawlor, Rita T; Tavano, Francesca; Boggi, Ugo; Dijk, Frederike; Cavestro, Giulia Martina; Vermeulen, Roel C H; Hackert, Thilo; Petrone, Maria Chiara; Uzunoğlu, Faik Güntac; Archibugi, Livia; Izbicki, Jakob R; Morelli, Luca; Zerbi, Alessandro; Landi, Stefano; Stocker, Hannah; Talar-Wojnarowska, Renata; Di Franco, Gregorio; Hegyi, Péter; Sperti, Cosimo; Carrara, Silvia; Capurso, Gabriele; Gazouli, Maria; Brenner, Hermann; Bunduc, Stefania; Busch, Olivier; Perri, Francesco; Oliverius, Martin; Hegyi, Péter Jeno; Goetz, Mara; Scognamiglio, Pasquale; Mambrini, Andrea; Arcidiacono, Paolo Giorgio; Kreivenaite, Edita; Kupcinskas, Juozas; Hussein, Tamas; Ermini, Stefano; Milanetto, Anna Caterina; Vodicka, Pavel; Kiudelis, Vytautas; Hlaváč, Viktor; Soucek, Pavel; Theodoropoulos, George E; Basso, Daniela; Neoptolemos, John P; Nóbrega Aoki, Mateus; Pezzilli, Raffaele; Pasquali, Claudio; Chammas, Roger; Testoni, Sabrina Gloria Giulia; Mohelnikova-Duchonova, Beatrice; Lucchesi, Maurizio; Rizzato, Cosmeri; Canzian, Federico; Campa, Daniele (BMJ Publishing Group, 2023-10-01)
    INTRODUCTION: Only a small number of risk factors for pancreatic ductal adenocarcinoma (PDAC) has been established. Several studies identified a role of epigenetics and of deregulation of DNA methylation. DNA methylation ...
  • IgG receptors and their role in antibody trafficking 
    Brinkhaus, Maximilian (Utrecht University, 2023-10-16)
    Immunoglobulins (Ig) are the results of an adaptive immune response and link humoral and cellular immunity in host defence with IgG being the most abundant of the Ig classes. IgG can bind via its fragment crystallizable ...