An Open Resource for Non-human Primate Imaging
Milham, Michael P.; Ai, Lei; Koo, Bonhwang; Xu, Ting; Amiez, Céline; Balezeau, Fabien; Baxter, Mark G.; Blezer, Erwin L.A.; Brochier, Thomas; Chen, Aihua; Croxson, Paula L.; Damatac, Christienne G.; Dehaene, Stanislas; Everling, Stefan; Fair, Damian A.; Fleysher, Lazar; Freiwald, Winrich; Froudist-Walsh, Sean; Griffiths, Timothy D.; Guedj, Carole; Hadj-Bouziane, Fadila; Ben Hamed, Suliann; Harel, Noam; Hiba, Bassem; Jarraya, Bechir; Jung, Benjamin; Kastner, Sabine; Klink, P. Christiaan; Kwok, Sze Chai; Laland, Kevin N.; Leopold, David A.; Lindenfors, Patrik; Mars, Rogier B.; Menon, Ravi S.; Messinger, Adam; Meunier, Martine; Mok, Kelvin; Morrison, John H.; Nacef, Jennifer; Nagy, Jamie; Rios, Michael Ortiz; Petkov, Christopher I.; Pinsk, Mark; Poirier, Colline; Procyk, Emmanuel; Rajimehr, Reza; Reader, Simon M.; Roelfsema, Pieter R.; Rudko, David A.; Rushworth, Matthew F.S.; Russ, Brian E.; Sallet, Jerome; Schmid, Michael Christoph; Schwiedrzik, Caspar M.; Seidlitz, Jakob; Sein, Julien; Shmuel, Amir; Sullivan, Elinor L.; Ungerleider, Leslie; Thiele, Alexander; Todorov, Orlin S.; Tsao, Doris; Wang, Zheng; Wilson, Charles R.E.; Yacoub, Essa; Ye, Frank Q.; Zarco, Wilbert; Zhou, Yong di; Margulies, Daniel S.; Schroeder, Charles E.
(2018) Neuron, volume 100, issue 1, pp. 61 - 74.e2
(Article)
Abstract
Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the
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necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets. The PRIMatE Data Exchange (PRIME-DE) consortium is an open science resource for the neuroimaging community aiming to facilitate efforts to map the non-human primate connectome. It aggregates and shares anatomical, functional, and diffusion MRI datasets from laboratories throughout the world.
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Keywords: Animals, Brain/anatomy & histology, Connectome/methods, Datasets as Topic, Information Dissemination/methods, Magnetic Resonance Imaging, Neuroimaging, Primates, General Neuroscience, Research Support, Non-U.S. Gov't, Journal Article, Research Support, N.I.H., Extramural
ISSN: 0896-6273
Publisher: Cell Press
Note: Funding Information: Primary support for the work by Z.W. is provided by the National Natural Science Foundation of China ( 81571300 , 31771174 ). Funding Information: Primary support for the work by C.M.S. and W.F. is supported by a Human Frontier Science Program Long-Term Fellowship ; the NIH ; an Irma T. Hirschl/Monique Weill-Caulier Trusts Award ; a Pew Scholar Award in the Biomedical Sciences; a McKnight Scholars Award ; a Human Frontier Science Program Research Grant; the New York Stem Cell Foundation ; the National Eye Institute ; the NIMH ; the NSF Science and Technology Center for Brains, Minds, and Machines ; and the National Science Foundation . Funding Information: Primary support for the work by A.C. is provided by the National Natural Science Foundation of China (No. 31371029 and No. 31571121 ) and the Innovation Program of Shanghai Municipal Education Commission (No. 14ZZ051 , No. 20130076120021 , No. 15JC1400104 , and No. 16JC1400100 ). Funding Information: Primary support for the work by E.Y. and N.H. is provided by the following grants: R01-NS081118, R01-NS085188, P41-EB015894, P30-NS076408, and the University of Minnesota Udall Center P50NS098573 . Funding Information: Primary support for the work by K.M., D.A.R., and A.S. from McGill University is provided by a grant from the Brain Canada Foundation . Funding Information: Primary support for the work by Newcastle University provided by Wellcome Trust , Medical Research Council , European Research Council , NC3Rs , and BBSRC . Funding Information: Primary support for the work by the University of Oxford is provided by the Medical Research Council UK , the Biotechnology and Biological Sciences Research Council UK , the Royal Society , and the Wellcome Trust . Funding Information: Primary support for the work by the NIMH is provided by the Intramural Research Program of the NIMH ( ZICMH00289 ). Funding Information: Primary support for the work by S.E. and R.S.M. is provided by the Canadian Institutes of Health Research and Brain Canada. Primary support for the work by C.M.S. and W.F. is supported by a Human Frontier Science Program Long-Term Fellowship (LT001118/2012). Funding Information: Primary support for the work by F.H.-B., M.M., and C.G. is provided by the French National Research Agency ( ANR-14-CE13-0005-1 and ANR-15-CE37-0003 ) and the NEURODIS Foundation . Funding Information: Primary support for the work by R.R. and D.T. is provided by NIH grant R01 EY019702 . Funding Information: Primary support for the work by E.L.A.B., O.S.T., P.L., K.N.L., and S.M.R. was provided by the John Templeton Foundation , the Canada Foundation for Innovation , and the Anna-Greta och Holger Crafoords Stiftelse . Funding Information: Primary support for the work by S.C.K. and Y.-d.Z. is provided by the following grants: Ministry of Education of PRC Humanities and Social Sciences Research Grant 16YJC190006 ; STCSM Shanghai Pujiang Program 16PJ1402800l ; STCSM Natural Science Foundation of Shanghai 16ZR1410200 ; and National Key Fundamental Research (973) Program of China Grant 2013CB329501 . Funding Information: Primary support for the work by P.R.R. and P.C.K. is provided by grants from the Netherlands Organisation for Scientific Research (NWO) and the European Union . Publisher Copyright: © 2018 The Authors
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